Items where Subject is "Others > Biotechnology"

Article

Abhishek, S and Chaturvedi, S and Gupta, A and Ahmed, Ghufran and Das, Vidyanand Ravi and Narayan, Shyam (2021) A simple monophasic LGPY medium for routine maintenance of Leishmania donovani promastigotes. Parasitology Research, 120 (8). pp. 2969-2971. ISSN 09320113

Abhishek, S. and Rajakumara, E. and et al, . (2021) Helical and β-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition. Biochemistry, 60 (35). pp. 2652-2662. ISSN 00062960

Abhishek, Suman and Deeksha, Waghela and Rajakumara, Eerappa (2022) Mechanistic insights into allosteric regulation of methylated DNA and histone H3 recognition by SRA and SET domains of SUVH5 and the basis for di‐methylation of lysine residue. The FEBS Journal. ISSN 1742-464X

Abhishek, Suman and Nakarakanti, Naveen Kumar and Deeksha, Waghela and Rajakumara, Eerappa (2021) Mechanistic insights into recognition of symmetric methylated cytosines in CpG and non-CpG DNA by UHRF1 SRA. International Journal of Biological Macromolecules, 170. pp. 514-522. ISSN 01418130

Abhishek, Suman and Nivya, M Angel and Nakarakanti, Naveen Kumar and Deeksha, Waghela and Khosla, Sanjeev and Eerappa, Rajakumara (2018) Biochemical and dynamic basis for combinatorial recognition of H3R2K9me2 by dual domains of UHRF1. Biochimie. ISSN 0300-9084 (In Press)

Abhishek, Suman and Sreeragh, Sivadas and Mutyala, Satish and Waghela, Deeksha and Eerappa, Rajakumara (2019) Dynamic Basis for Auranofin Drug Recognition by Thiol-Reductases of Human Pathogens and Intermediate Coordinated Adduct Formation with Catalytic Cysteine Residues. ACS Omega, 4 (5). pp. 9593-9602. ISSN 2470-1343

Agarwal, S and Mishra, P and Shivange, G and Kodipelli, N and Moros, M and de la Fuente, J M and Roy, Anindya (2015) Citrate-capped gold nanoparticles for the label-free detection of ubiquitin C-terminal hydrolase-1. Analyst, 140. pp. 1166-1173. ISSN 0003-2654

Ajjugal, Y. and Rathinavelan, T. (2021) Conformational distortions induced by periodically recurring A…A in d(CAG).d(CAG) provide stereochemical rationale for the trapping of MSH2.MSH3 in polyQ disorders. Computational and Structural Biotechnology Journal, 19. pp. 4447-4455. ISSN 20010370

Ajjugal, Yogeeshwar and Rathinavelan, Thenmalarchelvi (2021) Sequence dependent influence of an A…A mismatch in a DNA duplex: An insight into the recognition by hZαADAR1 protein. Journal of Structural Biology, 213 (1). p. 107678. ISSN 10478477

Ajjugal, Yogeeshwar and Tomar, Kripi and Rao, D Krishna and Rathinavelan, Thenmalarchelvi (2021) Spontaneous and frequent conformational dynamics induced by A…A mismatch in d(CAA)·d(TAG) duplex. Scientific Reports, 11 (1). ISSN 2045-2322

Akila, M and Earappa, Rajakumara and Qureshi, Asif (2020) Ambient concentration of airborne microbes and endotoxins in rural households of southern India. Building and Environment, 179. p. 106970. ISSN 03601323

Akula, Deepa and O’Connor, Timothy R. and Anindya, Roy (2021) Oxidative demethylase ALKBH5 repairs DNA alkylation damage and protects against alkylation-induced toxicity. Biochemical and Biophysical Research Communications, 534. pp. 114-120. ISSN 0006291X

Annapurna, S M and Harikrishna, S S and Aravind, K B and Pawar, Parag D (2015) Targeting FtsZ as novel therapeutic strategy against multi-drug resistant staphylococcus aureus. Asian journal of microbiology, biotechnology & environmental sciences, 17 (1). pp. 131-138. ISSN 0972-3005

Ashok, A and Doriya, K and Rao, D R M and Devarai, Santhosh Kumar (2017) Design of Solid State Bioreactor for Industrial Applications: An Overview to Conventional Bioreactors. Biocatalysis and Agricultural Biotechnology, 9. pp. 11-18. ISSN 1878-8181

Avanthi, Althuri (2023) Sustainable enzymatic treatment of organic waste in a framework of circular economy. Bioresource Technology, 370. p. 128487. ISSN 0960-8524

Bal, Elodie and Kumar, Rahul and Hadigol, Mohammad and et al, . (2022) Super-enhancer hypermutation alters oncogene expression in B cell lymphoma. Nature. ISSN 0028-0836

Banerjee, Srishti and Chakraborty, Shreyayukta and Ray, Sandipan (2022) Systems Biology of COVID-19 and Human Diseases: Beyond a Bird's Eye View, and Toward One Health. OMICS: A Journal of Integrative Biology. pp. 1-4. ISSN 1557-8100

Banerjee, Srishti and Ray, Sandipan (2023) Circadian medicine for aging attenuation and sleep disorders: Prospects and challenges. Progress in Neurobiology, 220. p. 102387. ISSN 0301-0082

Bangaru, Madhavi Latha Yadav and Medabalimi, Ravi Kumar and Babu, Sobhan and Raghavendra, Nidhanapati K. (2021) REMP software to introduce a screening REstriction site in site-directed Mutagenesis Primer. SoftwareX, 16. pp. 1-5. ISSN 2352-7110

Bhanjadeo, Madhabi M. and Nial, Partha S. and Sathyaseelan, Chakkarai and Singh, Ajit K. and Dutta, Juhi and Rathinavelan, Thenmalarchelvi and et al, . (2022) Biophysical interaction between lanthanum chloride and (CG)n or (GC)n repeats: A reversible B-to-Z DNA transition. International Journal of Biological Macromolecules, 216. pp. 698-709. ISSN 0141-8130

Bharathi, V and Girdhar, A and Patel, Basant Kumar (2017) A Protocol of Using White/Red Color Assay to Measure Amyloid-induced Oxidative Stress in Saccharomyces cerevisiae. Bio-Protocol, 7 (15). ISSN 2331-8325

Bharathi, V and Girdhar, A and Prasad, A and Verma, M and Taneja, V and Patel, Basant Kumar (2016) Use ofade1andade2mutations for development of a versatile red/white colour assay of amyloid-induced oxidative stress insaccharomyces cerevisiae. Yeast. ISSN 0749-503X (In Press)

Bharathi, V and Giridhar, A and Prasad, A and Verma, M and Taneja, V and Patel, Basant Kumar (2016) Use of ade1 and ade2 mutations for development of a versatile red/white colour assay of amyloid-induced oxidative stress in saccharomyces cerevisiae. Yeast, 33 (12). pp. 607-620. ISSN 0749-503X

Bharathi, V. and Manglunia, R.R. and Sharma, N. and Nirwal, S. and Patel, Basant Kumar (2021) Pharmaceutical acetylation can modulate the amyloidogenicity of human serum albumin. Indian Journal of Biochemistry and Biophysics, 58 (4). pp. 344-351. ISSN 0301-1208

Bharathi, V. and Patel, B. K. and et al, . (2021) Role of CNC1 gene in TDP-43 aggregation-induced oxidative stress-mediated cell death in S. cerevisiae model of ALS. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1868 (6). p. 118993. ISSN 01674889

Bharathi, Vidhya and Bajpai, Akarsh and Patel, Basant Kumar and et al, . (2022) Elevated constitutive expression of Hsp40 chaperone Sis1 reduces TDP-43 aggregation-induced oxidative stress in Ire1 pathway dependent-manner in yeast TDP-43 proteinopathy model of amyotrophic lateral sclerosis. Biochemical and Biophysical Research Communications, 595. pp. 28-34. ISSN 0006-291X

Bharathi, Vidhya and Girdhar, Amandeep and Patel, Basant Kumar (2020) Role of CNC1 gene in TDP-43 aggregation-induced oxidative stress-mediated cell death in S. cerevisiae model of AL. Bioarxiv.

Bhargava, Anamika (2023) Voltage-Gated T-Type Calcium Channel Modulation by Kinases and Phosphatases: The Old Ones, the New Ones, and the Missing Ones. Cells, 12 (3). p. 461. ISSN 2073-4409

Bhargava, Anamika and Saha, S (2018) T-Type voltage gated calcium channels: a target in breast cancer? Breast Cancer Research and Treatment. ISSN 0167-6806 (In Press)

Bhatia, M and Satish Babu, R and Sonawane, S H and Gogate, P R and Girdhar, A and Reddy, E R and Pola, M (2017) Application of nanoadsorbents for removal of lead from water. International Journal of Environmental Science and Technology, 14 (5). pp. 1135-1154. ISSN 1735-1472

C N, Babu and Paladugu, S and N, Sampath and G, Prabusankar (2014) Cadmium coordination polymers based on flexible bis(imidazole) ligands: A rare example for doublet of doublet cadmium polyhedron arrangements. Journal of Molecular Structure, 1075. pp. 147-153. ISSN 0022-2860

Ch, Ratnasekhar and Rey, Guillaume and Ray, Sandipan and et al, . (2021) Rhythmic glucose metabolism regulates the redox circadian clockwork in human red blood cells. Nature Communications, 12 (1). pp. 1-14. ISSN 2041-1723

Chauhan, Meenakshi and Basu, Suparna Mercy and Giri, Jyotsnendu and et al, . (2022) A facile strategy for the preparation of polypropylene sulfide nanoparticles for hydrophobic and base‐sensitive cargo. Journal of Applied Polymer Science, 139 (10). p. 51767. ISSN 0021-8995

Das, Madhusmita and Sharma, Mukul and Vedithi, SundeepChaitanya and Roy, Anindya and Ebenezer, Mannam (2017) Sequence homology and expression profile of genes associated with dna repair pathways in Mycobacterium leprae. International Journal of Mycobacteriology, 6 (4). pp. 365-378. ISSN 2212-5531

Das, Undurti N. (2022) Syntaxin interacts with arachidonic acid to prevent diabetes mellitus. Lipids in Health and Disease, 21 (1). ISSN 1476-511X

Deepa, Akula and Naveena, Kodipelli and Roy, Anindya (2018) DNA repair activity of Fe(II)/2OG-dependent dioxygenases affected by low iron level in Saccharomyces cerevisiae. FEMS Yeast Research, 18 (2). ISSN 1567-1364

Devi, Savita and Eerappa, Rajakumara and Ahmed, N (2015) Induction of Mincle by Helicobacter pylori and consequent anti-inflammatory signaling denote a bacterial survival strategy. Scientific Reports, 5 (15049). pp. 1-13. ISSN 2045-2322

Dey, Sreenath (2023) Physicochemical properties of green synthesised ZnO nanoparticles and utilisation for treatment of breast cancer. Process Biochemistry, 129. pp. 170-184. ISSN 1359-5113

Eerappa, Rajakumara and Nakarakanti, N K and Nivya, M Angel and M, Satish (2016) Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain. Scientific Reports, 6 (20161). pp. 1-11. ISSN 2045-2322

Gaur, Himanshu and Bhargava, Anamika (2019) Glyphosate induces toxicity and modulates calcium and NO signaling in zebrafish embryos. Biochemical and Biophysical Research Communications. ISSN 0006291X

Gaur, Himanshu and Purushothaman, Srinithi and Bhargava, Anamika and et al, . (2018) Sodium benzoate induced developmental defects, oxidative stress and anxiety-like behaviour in zebrafish larva. Biochemical and Biophysical Research Communications, 502 (3). pp. 364-369. ISSN 0006291X

Gembali, R and S, Vishwanath and Prasad, A and Patel, Basant Kumar and G, Prabusankar (2016) Imidazolium tagged acridines: Synthesis, characterization and applications in DNA binding and anti-microbial activities. Journal of Molecular Structure, 1107. pp. 291-299. ISSN 0022-2860

George, A and Raghavendra, N K (2017) L368F/V408F double mutant of IBD of LEDGF/p75 retains interaction with M178I mutant of HIV-1 integrase. Biochemical and Biophysical Research Communications, 490 (2). pp. 271-275. ISSN 0006-291X (In Press)

Girdhar, Amandeep and Bharathi, Vidhya and Patel, Basant Kumar and et al, . (2019) Computational insights into mechanism of AIM4-mediated inhibition of aggregation of TDP-43 protein implicated in ALS and evidence for in vitro inhibition of liquid-liquid phase separation (LLPS) of TDP-432C-A315T by AIM4. bioRxiv.org.

Glukhov, A V and Rosenshtraukh, L V and Bhargava, Anamika and Miragoli, M and Boukens, B J D (2015) Atrial Fibrillation: Biophysics, Molecular Mechanisms, and Novel Therapies. BioMed Research International, 2015 (780671). pp. 1-2. ISSN 2314-6133

Glukhov, Alexey V and Balycheva, Marina and Bhargava, Anamika and Ilkan, Zeki (2015) Direct Evidence for Microdomain-Specific Localization and Remodeling of Functional L-Type Calcium Channels in Rat and Human Atrial Myocytes. Circulation, 132 (25). pp. 2372-2384. ISSN 0009-7322

Goldsmith, G and Rathinavelan, Thenmalarchelvi and Yathindra, N (2016) Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets. PLoS ONE, 11 (3). e0152102_1-29. ISSN 1932-6203

Gururaj, S and Mohan, M and Nigam, R and Kodipelli, N and Roy, Anindya (2016) RecA stimulates AlkB-mediated direct repair of DNA adducts. Nucleic Acids Research. pp. 1-10. ISSN 0305-1048

Hasan, Uzma and Giri, Jyotsnendu (2023) Biomaterial-based platforms for modulating immune components against cancer and cancer stem cells. Acta Biomaterialia, 161. pp. 1-36. ISSN 17427061

Hasan, Uzma and Singh, Sandeep K (2019) The Astrocyte–Neuron Interface: An Overview on Molecular and Cellular Dynamics Controlling Formation and Maintenance of the Tripartite Synapse. Methods in Molecular Biology, 1938. pp. 3-18. ISSN 1064-3745

Hong, TingTing and Yang, Huanghe and Bhargava, Anamika and et al, . (2014) Cardiac BIN1 folds T-tubule membrane, controlling ion flux and limiting arrhythmia. Nature Medicine, 20 (6). pp. 624-632. ISSN 1078-8956

Jha, Pawan K. and Valekunja, Utham K. and Ray, Sandipan and et al, . (2022) Single-cell transcriptomics and cell-specific proteomics reveals molecular signatures of sleep. Communications Biology, 5 (1). pp. 1-16. ISSN 2399-3642

Karumban, K.S. and Misra, Ashish and Maji, Somnath and et al, . (2022) Mononuclear cobalt(II) complexes with polypyridyl ligands: Synthesis, characterization, DNA interactions and in vitro cytotoxicity towards human cancer cells. Journal of Inorganic Biochemistry, 233. pp. 1-15. ISSN 0162-0134

Karumban, Kalai Selvan and Muley, Arabinda and Raut, Rajnikant and Gupta, Parth and Giri, Bishnubasu and Kumbhakar, Sadananda and Misra, Ashish and Maji, Somnath (2022) Mononuclear Co(ii) polypyridyl complexes: synthesis, molecular structure, DNA binding/cleavage, radical scavenging, docking studies and anticancer activities. Dalton Transactions, 51 (18). pp. 7084-7099. ISSN 1477-9226

Khan, Faiz Ahmed and Ahmad, S and Kodipelli, N and Shivange, G and Roy, Anindya (2014) Syntheses of a library of molecules on the marine natural product ianthelliformisamines platform and their biological evaluation. Organic and Biomolecular Chemistry, 12 (23). pp. 3847-3865. ISSN 1477-0520

Khan, N and Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2015) Twisting Right to Left: A...A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation. PLoS Computational Biology, 11 (1). pp. 1-21. ISSN 1553-734X

Kolimi, Narendar and Ajjugal, Yogeeshwar and Rathinavelan, Thenmalarchelvi (2017) A B−−Z junction induced by an A...A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZαADAR1 protein. Journal of Biological Chemistry. pp. 1-22. ISSN 0021-9258 (In Press)

Kumari, Neema and Bhargava, Anamika and Rath, Subha Narayan (2020) T-type calcium channel antagonist, TTA-A2 exhibits anti-cancer properties in 3D spheroids of A549, a lung adenocarcinoma cell line. Life Sciences, 260. p. 118291. ISSN 00243205

Kumari, Neema and Giri, Pravin Shankar and Rath, Subha Narayan (2021) Adjuvant role of a T-type calcium channel blocker, TTA-A2, in lung cancer treatment with paclitaxel. Cancer Drug Resistance, 4 (4). pp. 1-12. ISSN 2578-532X

Kumari, R and Singh, S and Monisha, M and Bhowmick, S and Roy, Anindya and Das, N and Das, P (2016) Hierarchical coassembly of DNA–triptycene hybrid molecular building blocks and zinc protoporphyrin IX. Beilstein Journal of Nanotechnology (7). pp. 697-707. ISSN 2190-4286

Kumbhakar, Sadananda and Gupta, P. and Giri, Bishnubasu and Muley, Arabinda and Karumban, K.S. and Misra, Ashish and Maji, Somnath (2022) Photolability of NO in ruthenium nitrosyls with pentadentate ligand induces exceptional cytotoxicity towards VCaP, 22Rv1 and A549 cancer cells under therapeutic condition. Journal of Molecular Structure, 1265. pp. 1-15. ISSN 0022-2860

Kunduru, B R and Nair, S A and Rathinavelan, Thenmalarchelvi (2015) EK3D: an E. coli K antigen 3-dimensional structure database. Nucleic Acids Research. pp. 1-7. ISSN 0305-1048

Magateshvaren Saras, Murali Aadhitya and Patro, L. Ponoop Prasad and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2022) Geographical distribution of SARS‐CoV ‐2 amino acids mutations and the concomitant evolution of seven distinct clades in non‐human hosts. Zoonoses and Public Health. pp. 1-10. ISSN 1863-1959

Magateshvaren Saras, Murali Aadhitya and Patro, L. Ponoop Prasad and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2022) SARS‐CoV ‐2 whole‐proteome sequences from environment as an indicator of community viral distribution, evolution and epidemiological dynamics: A cohort analysis of Austria. Environmental Microbiology Reports. pp. 1-6. ISSN 1758-2229

Manickavasagam, Pratibha and Abhishek, Suman and Eerappa, Rajakumara (2022) Designing ferritin nanocage based vaccine candidates for SARS-CoV-2 by in silico engineering of its HLA I and HLA II epitope peptides. Journal of Biomolecular Structure and Dynamics. pp. 1-13. ISSN 0739-1102

Manohar, Kuruba and Gupta, Rishikesh Kumar and Gupta, Parth and Saha, Debasmita and Gare, Suman and Sarkar, Rahuldeb and Misra, Ashish and Giri, Lopamudra (2021) FDA approved L-type channel blocker Nifedipine reduces cell death in hypoxic A549 cells through modulation of mitochondrial calcium and superoxide generation. Free Radical Biology and Medicine, 177. pp. 189-200. ISSN 0891-5849

Mehta, Gunjan (2023) Single-molecule tracking dataset of histone H3 (Hht1) in Saccharomyces cerevisiae. Data in Brief, 47. p. 108925. ISSN 2352-3409

Miragoli, M and Sanchez-Alonso, J L and Bhargava, Anamika and Wright, P T and Sikkel, M and Schobesberger, S and Diakonov, I and Novak, P and Castaldi, A and Cattaneo, P and Lyon, A R and Lab, M J and Gorelik, J (2016) Microtubule-Dependent Mitochondria Alignment Regulates Calcium Release in Response to Nanomechanical Stimulus in Heart Myocytes. Cell Reports, 14 (1). pp. 140-151. ISSN 2211-1247

Mohan, Monisha and Akula, Deepa and Roy, Anindya (2019) Human RAD51 paralogue RAD51C fosters repair of alkylated DNA by interacting with the ALKBH3 demethylase. Nucleic Acids Research. ISSN 0305-1048

Mohan, Monisha and Hussain, Mulla Althafh and Khan, Faiz Ahmed and Anindya, Roy (2021) Symmetrical and un-symmetrical curcumin analogues as selective COX-1 and COX-2 inhibitor. European Journal of Pharmaceutical Sciences, 160. p. 105743. ISSN 09280987

Mohan, Monisha and Pandya, Vishal and Roy, Anindya (2018) Escherichia coli AlkB and single-stranded DNA binding protein SSB interaction explored by Molecular Dynamics Simulation. Journal of Molecular Graphics and Modelling, 84. pp. 29-35. ISSN 1093-3263

Negi, Rollania and Jena, Tapan Kumar and Jyoti, . and Tuti, Nikhil Kumar and Anindya, Roy and Khan, Faiz Ahmed (2022) Solvent controlled synthesis of 2,3-diarylepoxy indenones and α-hydroxy diarylindanones and their evaluation as inhibitors of DNA alkylation repair. Organic & Biomolecular Chemistry, 20 (29). pp. 5820-5835. ISSN 1477-0520

Nema, S and Hasan, W and Bhargava, Anamika and Bhargava, Y (2016) A novel method for automated tracking and quantification of adult zebrafish behaviour during anxiety. Journal of Neuroscience Methods, 271. pp. 65-75. ISSN 0165-0270

Nigam, Richa and Babu, Kaki Raveendra and Ghosh, Topi and Kumari, Bhavini and Akula, Deepa and Rath, Subha Narayan and Das, Prolay and Roy, Anindya and Khan, Faiz Ahmed (2018) Indenone derivatives as inhibitor of human DNA dealkylation repair enzyme AlkBH3. Bioorganic & Medicinal Chemistry. ISSN 0968-0896 (In Press)

Nigam, Richa and Mohan, Monisha and Shivange, Gururaj and Dewangan, Pranjal Kumar and Roy, Anindya (2018) Escherichia coli AlkB interacts with single-stranded DNA binding protein SSB by an intrinsically disordered region of SSB. Molecular Biology Reports. ISSN 0301-4851

Nigam, Richa and Raveendra Babu, Kaki and Ghosh, Topi and Kumari, Bhavini and Das, Prolay and Anindya, Roy and Ahmed Khan, Faiz (2021) Synthesis of 2‐Chloro‐3‐amino indenone derivatives and their evaluation as inhibitors of DNA dealkylation repair. Chemical Biology & Drug Design, 97 (6). pp. 1170-1184. ISSN 1747-0277

Nigam, Richa and Roy, Anindya (2018) Escherichia coli single-stranded DNA binding protein SSB promotes AlkB-mediated DNA dealkylation repair. Biochemical and Biophysical Research Communications. ISSN 0006291X (In Press)

Nirwal, S. and Patel, B.K. and et al, . (2021) Amyloid-like aggregation of bovine serum albumin at physiological temperature induced by cross-seeding effect of HEWL amyloid aggregates. Biophysical Chemistry, 278. p. 106678. ISSN 0301-4622

Patel, Basant Kumar and Medicherla, V J (2010) Structural Insights of the Cysteine Protease Heynein from Induction and Characterization of Non-native Intermediate States. Journal of Proteins and Proteomics, 1 (2). pp. 43-51. ISSN 0975-8151

Patro, L Ponoop Prasad and Rathinavelan, Thenmalarchelvi (2019) Targeting the Sugary Armor of Klebsiella Species. Frontiers in Cellular and Infection Microbiology, 9. ISSN 2235-2988

Patro, L Ponoop Prasad and Sathyaseelan, Chakkarai and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2021) Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades. Infection, Genetics and Evolution, 93 (104973). ISSN 15671348

Patro, L Ponoop Prasad and Sudhakar, Karpagam Uma and Rathinavelan, Thenmalarchelvi (2020) K-PAM: a unified platform to distinguish Klebsiella species K- and O-antigen types, model antigen structures and identify hypervirulent strains. Scientific Reports, 10 (1). ISSN 2045-2322

Patro, L. Ponoop Prasad and Sathyaseelan, Chakkarai and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2021) The evolving proteome of SARS-CoV-2 predominantly uses mutation combination strategy for survival. Computational and Structural Biotechnology Journal, 19. pp. 3864-3875. ISSN 20010370

Patro, L.P.P. and Rathinavelan, Thenmalarchelvi (2022) STRIDER: Steric hindrance and metal coordination identifier. Computational Biology and Chemistry, 98. pp. 1-7. ISSN 1476-9271

Paul, K B and Singh, V and Vanjari, Siva Rama Krishna and Singh, Shiv Govind (2017) One step biofunctionalized electrospun multiwalled carbon nanotubes embedded zinc oxide nanowire interface for highly sensitive detection of carcinoma antigen-125. Biosensors and Bioelectronics, 88. pp. 144-152. ISSN 0956-5663

Ponoop Prasad Patro, L and Kumar, A and Kolimi, N and Rathinavelan, Thenmalarchelvi (2017) 3D-NuS: A Web Server for Automated Modeling and Visualization of non-canonical 3-D imensional Nu cleic Acid S tructures. Journal of Molecular Biology, 429 (16). pp. 2438-2448. ISSN 0022-2836

Prasad, A and Raju, G and Sivalingam, V and Girdhar, A and Verma, M and Vats, A and Taneja, V and G, Prabusankar and Patel, Basant Kumar (2016) An acridine derivative, [4,5-bis{(N-carboxy methyl imidazolium)methyl}acridine] dibromide, shows anti-TDP-43 aggregation effect in ALS disease models. Scientific Reports, 6 (39490). pp. 1-14. ISSN 2045-2322

Prasad, A. and Patel, B. K. and et al, . (2019) Molecular Mechanisms of TDP-43 Misfolding and Pathology in Amyotrophic Lateral Sclerosis. Frontiers. ISSN 0160-9009

Prasad, Archana and Sivalingam, Vishwanath and Bharathi, Vidhya and Girdhar, Amandeep and Patel, Basant Kumar (2018) The amyloidogenicity of a C-terminal region of TDP-43 implicated in Amyotrophic Lateral Sclerosis can be affected by anions, acetylation and homodimerization. Biochimie. ISSN 0300-9084 (In Press)

Preethi, S and Bharathi, Vidhya and Patel, Basant Kumar (2021) Zn2+ modulates in vitro phase separation of TDP-432C and mutant TDP-432C-A315T C-terminal fragments of TDP-43 protein implicated in ALS and FTLD-TDP diseases. International Journal of Biological Macromolecules, 176. pp. 186-200. ISSN 0141-8130

Pullaguri, Narasimha and Grover, Poonam and Abhishek, Suman and Rajakumara, Eerappa and Bhargava, Yogesh and Bhargava, Anamika (2021) Triclosan affects motor function in zebrafish larva by inhibiting ache and syn2a genes. Chemosphere, 266 (128930). ISSN 00456535

Pullaguri, Narasimha and Kagoo, Andrea R and Bhargava, Anamika (2022) New insights into inhibitory nature of triclosan on acetylcholinesterase activity. Toxicology, 466. ISSN 0300_483X

Pullaguri, Narasimha and Nema, Shubham and Bhargava, Anamika (2020) Triclosan alters adult zebrafish behavior and targets acetylcholinesterase activity and expression. Environmental Toxicology and Pharmacology, 75. ISSN 1382-6689

Puppala, Alekhya and Rankawat, Sourbh and Ray, Sandipan (2021) Circadian Timekeeping in Anticancer Therapeutics: An Emerging Vista of Chronopharmacology Research. Current Drug Metabolism, 22 (13). pp. 998-1008. ISSN 1389-2002

Rajakumara, Eerappa and Abhishek, Suman and Nitin, Kulhar and et al, . (2022) Structure and Cooperativity in Substrate–Enzyme Interactions: Perspectives on Enzyme Engineering and Inhibitor Design. ACS Chemical Biology, 17 (2). pp. 266-280. ISSN 1554-8929

Rajakumara, Eerappa and Satish, Mutyala and Abhishek, Suman (2020) In vitro studies on non-canonical DNA binding specificities of KAP6 and HMO1 and mechanistic insights into DNA bound and unbinding dynamics of KAP6. International Journal of Biological Macromolecules, 160. pp. 925-933. ISSN 01418130

Rathinavelan, T and Tejero, M L and Lefebre, M and Chatterjee, S and McShan, A C and Guo, D C and Tang, C and Galan, J E and De Guzman, R N (2014) NMR Model of PrgI-SipD Interaction and its Implications in the Needle-Tip Assembly of the Salmonella Type III Secretion System. Journal of Molecular Biology, 426 (16). pp. 2958-2969. ISSN 0022-2836

Rathinavelan, Thenmalarchelvi (2023) CoVe-Tracker: An Interactive SARS-CoV-2 Pan Proteome Evolution Tracker. Journal of Proteome Research, 22 (6). pp. 1984-1996. ISSN 1535-3893

Rathinavelan, Thenmalarchelvi (2023) Sequence patterns and HMM profiles to predict proteome wide zinc finger motifs. Pattern Recognition, 135. p. 109134. ISSN 0031-3203

Rathinavelan, Thenmalarchelvi and Lara-Tejero, Maria and Lefebre, Matthew and et al, . (2014) NMR Model of PrgI–SipD Interaction and Its Implications in the Needle-Tip Assembly of the Salmonella Type III Secretion System. Journal of Molecular Biology, 426 (16). pp. 2958-2969. ISSN 00222836

Ray, Sandipan (2023) The Promises of Proteomics and Metabolomics for Unravelling the Mechanism and Side Effect Landscape of Beta-Adrenoceptor Antagonists in Cardiovascular Therapeutics. OMICS A Journal of Integrative Biology, 27 (3). pp. 87-92. ISSN 1536-2310

Revi, N. and Sankaranarayanan, S.A. and Rengan, Aravind Kumar (2022) A study on the role of eugenol encapsulated liposomes in facilitating neuron -microglia mediated wound recovery. Materialia, 23 (101454). pp. 1-11. ISSN 2589-1529

Revi, Neeraja and Rengan, Aravind Kumar (2021) Impact of dietary polyphenols on neuroinflammation-associated disorders. Neurological Sciences, 42 (8). pp. 3101-3119. ISSN 1590-1874

Roy, Anindya (2023) New-onset type 1 diabetes and severe acute respiratory syndrome coronavirus 2 infection. Immunology & Cell Biology, 101 (3). pp. 191-203. ISSN 0818-9641

Roy, Anindya (2017) Non-heme dioxygenases in tumor hypoxia: They're all bound with the same fate. DNA Repair, 49. pp. 21-25. ISSN 1568-7864

Roy, Anindya (2016) Non-heme dioxygenases in tumor hypoxia: They’re all bound with the same fate. DNA Repair. ISSN 1568-7864 (In Press)

Roy, Anindya (2020) Single-stranded DNA damage: Protecting the single-stranded DNA from chemical attack. DNA Repair, 87. ISSN 15687864

S, Gururaj and K, Naveena and Roy, Anindya (2014) A nonradioactive restriction enzyme-mediated assay to detect DNA repair by Fe(II)/2-oxoglutarate-dependent dioxygenase. Analytical Biochemistry, 465. pp. 35-37. ISSN 0003-2697

Sachdeva, S and Kolimi, Narendar and Nair, S A and Rathinavelan, Thenmalarchelvi (2016) Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin. Scientific Reports. pp. 1-14. ISSN 2045-2322

Sachdeva, S and Palur, R V and Sudhakar, K U and Rathinavelan, Thenmalarchelvi (2017) E. coli Group 1 Capsular Polysaccharide Exportation Nanomachinary as a Plausible Antivirulence Targetin the Perspective of Emerging Antimicrobial Resistance. Frontiers in Microbiology, 8 (70). pp. 1-19. ISSN 1664-302X

Sanchez-Alonso, J L and Bhargava, Anamika and O’Hara, T and Glukhov, A V and Schobesberger, S and Bhogal, N and Sikkel, M B and Mansfield, C and Korchev, Y E and Lyon, A R and Punjabi, P P and Nikolaev, V O and Trayanova, N A and Gorelik, J (2016) Microdomain-Specific Modulation of L-Type Calcium Channels Leads to Triggered Ventricular Arrhythmia in Heart FailureNovelty and Significance. Circulation Research, 119 (8). pp. 944-955. ISSN 0009-7330

Sankaranarayanan, Sri Amruthaa and Ramakrishna, B. and Rengan, Aravind Kumar and et al, . (2022) Iron oxide nanoparticles for theranostic applications - Recent advances. Journal of Drug Delivery Science and Technology, 70. p. 103196. ISSN 1773-2247

Sarviya, Nandini and Basu, Suparna Mercy and Giri, Jyotsnendu and et al, . (2022) Biomimicking nanofibrous gelatin microspheres recreating the stem cell niche for their ex-vivo expansion and in-vivo like differentiation for injectable stem cell transplantation. Biomaterials Advances, 139. pp. 1-17. ISSN 2772-9508

Sasikumar, Shyama and Boden, Andrew and Pati, Falguni and et al, . (2022) Galactose Tethered Decellularized Liver Matrix: Toward a Biomimetic and Biofunctional Matrix for Liver Tissue Engineering. ACS Applied Bio Materials, 5 (6). pp. 3023-3037. ISSN 2576-6422

Sasikumar, Shyama and Chameettachal, Shibu and Kingshott, Peter and Cromer, Brett and Pati, Falguni (2022) Hepatogenic differentiation of adipose-derived mesenchymal stem cells directed by topographical cues: a proof of concept study. Proceedings of the Indian National Science Academy. ISSN 0370-0046

Sasikumar, Shyama and Chameettachal, Shibu and Pati, Falguni and et al, . (2022) Influence of Liver Extracellular Matrix in Predicting Drug-Induced Liver Injury: An Alternate Paradigm. ACS Biomaterials Science & Engineering, 8 (2). pp. 834-846. ISSN 2373-9878

Sathyaseelan, Chakkarai and Vijayakumar, Vinothini and Rathinavelan, Thenmalarchelvi (2021) CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms. Journal of Molecular Biology, 433 (11). p. 166629. ISSN 00222836

Satish, Mutyala and Kumari, Sandhya and Deeksha, Waghela and Abhishek, Suman and Nitin, Kulhar and Adiga, Satish Kumar and Hegde, Padmaraj and Dasappa, Jagadeesh Prasad and Kalthur, Guruprasad and Rajakumara, Eerappa (2021) Structure-based redesigning of pentoxifylline analogs against selective phosphodiesterases to modulate sperm functional competence for assisted reproductive technologies. Scientific Reports, 11 (1). ISSN 2045-2322

Satish, Mutyala and Nivya, M Angel and Abhishek, Suman and Nakarakanti, Naveen Kumar and Shivani, Dixit and Vani, M Vinuthna and Eerappa, Rajakumara (2017) Computational characterization of substrate and product specificities, and functionality of SAM binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize. Proteins: Structure, Function, and Bioinformatics. ISSN 0887-3585 (In Press)

Satish, Mutyala and Sandhya, Kumari and Nitin, Kulhar and Yashas Kiran, Ninjoor and Aleena, Babu and Satish Kumar, Adiga and Guruprasad, Kalthur and Rajakumara, Eerappa (2022) Computational, biochemical and ex vivo evaluation of xanthine derivatives against phosphodiesterases to enhance the sperm motility. Journal of Biomolecular Structure and Dynamics. pp. 1-11. ISSN 0739-1102

Saïdi, Fares and Mahanta, Utkarsha and Panda, Adyasha and Sharma, Gaurav and et al, . (2022) Bacterial Outer Membrane Polysaccharide Export (OPX) Proteins Occupy Three Structural Classes with Selective β-Barrel Porin Requirements for Polymer Secretion. Microbiology Spectrum. ISSN 2165-0497

Schobesberger, S and Wright, P and Tokar, S and Bhargava, Anamika and Mansfield, C and Glukhov, A V and Poulet, C and Buzuk, A and Monszpart, A and Sikkel, M and Harding, S E and Nikolaev, V O and Lyon, A R and Gorelik, J (2017) T-tubule remodelling disturbs localized β2-adrenergic signalling in rat ventricular myocytes during the progression of heart failure. Cardiovascular Research, 113 (7). pp. 770-782. ISSN 0008-6363

Sekar, Shwetha and Subbamanda, Yashashwini and Pullaguri, Narasimha and Sharma, Ankush and Sahu, Chittaranjan and Kumar, Rahul and Bhargava, Anamika (2022) Isoform-specific expression of T-type voltage-gated calcium channels and estrogen receptors in breast cancer reveals specific isoforms that may be potential targets. Current Research in Biotechnology, 4. pp. 459-467. ISSN 2590-2628

Serio, T R and Park, S-K and Hong, J Y and Arslan, F and Kanneganti, V and Patel, Basant Kumar and Tietsort, A and Tank, E M H and Li, X and Barmada, S J and Liebman, S W (2017) Overexpression of the essential Sis1 chaperone reduces TDP-43 effects on toxicity and proteolysis. PLOS Genetics, 13 (5). e1006805. ISSN 1553-7404

Shaji, Unnikrishnan Paruthiyezhath and Tuti, Nikhil and Das, Susmita and Anindya, Roy and et al, . (2022) Interactions between HIV protease inhibitor ritonavir and human DNA repair enzyme ALKBH2: a molecular dynamics simulation study. Molecular Diversity. ISSN 1381-1991

Sharma, Gaurav (2023) Unmasking of the von Willebrand A-domain surface adhesin CglB at bacterial focal adhesions mediates myxobacterial gliding motility. Science Advances, 9 (8). ISSN 2375-2548

Sharma, Mukul and Akula, Deepa and Mohan, Monisha and Nigam, Richa and Das, Madhusmita and Roy, Anindya (2019) Heteroexpression of Mycobacterium leprae hypothetical protein ML0190 provides protection against DNA-alkylating agent methyl methanesulfonate. Biochemical and Biophysical Research Communications. ISSN 0006-291X (In Press)

Sharma, Mukul and Das, Madhusmita and D, Diana and Wedderburn, Anna and Roy, Anindya (2018) Identification of novel open reading frames in the intergenic regions of Mycobacterium leprae genome and detection of transcript by qRT-PCR. Microbial Pathogenesis, 124. pp. 316-321. ISSN 0882-4010

Sharma, N and Vishwanath, S and Maurya, S and Prasad, A and Khandelwal, P and Yadav, S C and Patel, Basant Kumar (2015) New insights into in vitro amyloidogenic properties of human serum albumin suggest considerations for therapeutic precautions. FEBS Letters, 589 (24P-B). pp. 4033-4038. ISSN 0014-5793

Sharma, N and Vishwanath, S and Patel, Basant Kumar (2016) Recombinant Human Semenogelin-1 (Sg1) and Sg1 (1-159) form Detergent Stable Amyloid like Aggregates in vitro. Protein and Peptide Letters, 23 (1). pp. 87-96. ISSN 0929-8665

Shinde, Vinod Ravasaheb and Revi, Neeraja and Rengan, Aravind Kumar and et al, . (2022) Enhanced permeability and retention effect: A key facilitator for solid tumor targeting by nanoparticles. Photodiagnosis and Photodynamic Therapy, 39. p. 102915. ISSN 1572-1000

Shivange, G and Kodipelli, N and M, Monisha and Roy, Anindya (2014) A role for saccharomyces cerevisiae Tpa1 protein in direct alkylation repair. Journal of Biological Chemistry (289). pp. 35939-35952. ISSN 0021-9258

Shivange, G and Kodipelli, N and Roy, Anindya (2015) 2-Hydrazinobenzothiazole-based etheno-adduct repair protocol (HERP): A method for quantitative determination of direct repair of etheno-bases. DNA Repair, 28. pp. 8-13. ISSN 1568-7864

Singh, Gyaninder Pal and Nigam, Richa and Tomar, Gaurav Singh and Monisha, Mohan and Bhoi, Sanjeev Kumar and S, Arulselvi and Sengar, Kangana and Akula, Deepa and Panta, Prashanth and Roy, Anindya (2018) Early and rapid detection of UCHL1 in the serum of brain-trauma patients: a novel gold nanoparticle-based method for diagnosing the severity of brain injury. Analyst. ISSN 0003-2654 (In Press)

Singh, R and Miriyala, S S and Giri, Lopamudra and Mitra, Kishalay and Kareenhalli, V V (2017) Identification of Unstructured model for Subtilin production through Bacillus subtilis using Hybrid Genetic Algorithm. Process Biochemistry, 60. pp. 1-12. ISSN 1359-5113

Singh, Ruby and Rajakumara, Eerappa and Giri, Jyotsnendu and et al, . (2022) Silver sulfadiazine loaded core-shell airbrushed nanofibers for burn wound healing application. International Journal of Pharmaceutics, 613. ISSN 0378-5173

Singh, V and Monisha, M and Roy, Anindya and Das, P (2015) Self assembled nanocages from DNA-protoporphyrin hybrid molecules. RSC Advances, 5 (108). pp. 89025-89029. ISSN 2046-2069

Sivalingam, V and Patel, Basant Kumar (2016) Familial mutations in fibrinogen Aα (FGA) chain identified in renal amyloidosis increase in vitro amyloidogenicity of FGA fragment. Biochimie, 127. pp. 44-49. ISSN 0300-9084

Sivalingam, V and Prasanna, N L and Sharma, N and Prasad, A and Patel, Basant Kumar (2016) Wild-type hen egg white lysozyme aggregation in vitro can form self-seeding amyloid conformational variants. Biophysical Chemistry, 219. pp. 28-37. ISSN 0301-4622

Tomar, Gaurav Singh and Singh, Gyaninder Pal and Lahkar, Dhruba and Sengar, Kangana and Nigam, Richa and Mohan, Monisha and Roy, Anindya (2018) New biomarkers in brain trauma. Clinica Chimica Acta, 487. pp. 325-329. ISSN 0009-8981

Uttamrao, P.P. and Sathyaseelan, C. and Patro, L.P.P. and Rathinavelan, T. (2021) Revelation of Potent Epitopes Present in Unannotated ORF Antigens of SARS-CoV-2 for Epitope-Based Polyvalent Vaccine Design Using Immunoinformatics Approach. Frontiers in Immunology, 12. ISSN 16643224

Uttamrao, P.P. and Sathyaseelan, C. and Patro, L.P.P. and Rathinavelan, T. (2021) Revelation of Potent Epitopes Present in Unannotated ORF Antigens of SARS-CoV-2 for Epitope-Based Polyvalent Vaccine Design Using Immunoinformatics Approach. Frontiers in Immunology, 12. ISSN 25740962

V, gonzalez-huici and B, szakal and Eerappa, Rajakumara and et al, . (2014) DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity. The EMBO Journal.

Verma, Meenakshi and Girdhar, Amandeep and Patel, Basant Kumar and Ganguly, Nirmal K and Kukreti, Ritushree and Taneja, Vibha (2018) Q-Rich Yeast Prion [PSI+] Accelerates Aggregation of Transthyretin, a Non-Q-Rich Human Protein. Frontiers in Molecular Neuroscience, 11. ISSN 1662-5099

Yadav, Pulala Raghuveer and Basha, Syed Hussain and Pindi, Pavan Kumar (2022) Role of Thr199 residue in human β-carbonic anhydrase-II pH-dependent activity elucidated by microsecond simulation analysis. Journal of Biomolecular Structure and Dynamics, 40 (11). pp. 5016-5025. ISSN 0739-1102

Book Section

Ahmad, Faizan and Rankawat, Sourbh and Pathak, Upasana (2022) ROCKs as a potential drug target to combat Alzheimer's disease. In: Protein Kinase Inhibitors. Elsevier, pp. 409-433. ISBN 978-032391287-7, 978-032391349-2

Bhargava, Anamika and Gorelik, J (2019) Studying Structure and Function of the Heart Cells Using Scanning Ion Conductance Microscopy. In: Microscopy of the Heart. Springer International Publishing, pp. 1-20. ISBN 978-331995304-5

Bhargava, Anamika and Gorelik, Julia (2022) Correlating Cardiac Structure to Function Using Nanoscale Resolution Scanning Ion Conductance Microscopy. In: Scanning Ion Conductance Microscopy. Springer, pp. 139-157. ISBN ISSN 1867-2086

Glukhov, Alexey V and Bhargava, Anamika and Gorelik, Julia (2017) Distribution and Regulation of L-Type Ca2+ Channels in Cardiomyocyte Microdomains. In: Microdomains in the Cardiovascular System. Springer, pp. 293-319. ISBN 9783319545790

Misra, Ashish and Green, Michael R (2016) Fluorescence Reporter-Based Genome-Wide RNA Interference Screening to Identify Alternative Splicing Regulators. In: Eukaryotic Transcriptional and Post-Transcriptional Gene Expression Regulation. Methods in Molecular Biology, 1507 . Springer, New York, pp. 1-12. ISBN 9781493965168

Patro, L Poonop Prasad and Kumar, Abhishek and Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2018) 3D-NuS: A Web Server for Automated Modeling and Visualization of Non-Canonical 3-Dimensional Nucleic Acid Structures. In: Gandhian Young Technological Innovation. Honey Bee Network, New Delhi, pp. 53-54. ISBN 81871602046

Raut, Rajnikant and Gupta, Parth and Saini, Taruna and Mishra, Parul and Misra, Ashish (2022) Src kinase: An attractive therapeutic target for prostate cancer. In: Protein Kinase Inhibitors. Elsevier, pp. 479-503.

Conference or Workshop Item

Chakraborty, Nabanita and Ghosh Acharyya, Swati and Roy, Anindya (2022) Wettability of ZnO and curcumin decorated Graphene oxide nanocomposite for heavy metal ion removal from water. In: 22nd IEEE International Conference on Nanotechnology, NANO 2022, 4-8 July 2022, Palma de Mallorca.

Giri, Jyotsnendu and Chandra, B and Kumar, N and Cicerone, M (2014) Protein Stabilized and Sustained Deliverable Nanofiber Smart Scaffold for Multiphase Tissue Regeneration. In: TERMIS-AM Conference, 13-16 Dec, 2014, Washington, DC.

Kolimi, N and Khan, N and Rathinavelan, Thenmalarchelvi (2015) A…A mismatch instigates B- to Z-DNA transition in a DNA duplex comprising of CAG & GAC trinucleotide repeat expansions. In: National Symposium on Biophysics and Golden Jubilee Meeting of Indian Biophysical Society, Center for Interdisciplinary Research in Basic Sciences, 14-17 February 2015, New Delhi, Delhi.

Nair, S A and Rathinavelan, Thenmalarchelvi (2015) Bidirectional water conductivity of E.coli outer membrane lectin(Wzi) is regulated by surface aromatic residues and luminal hydrophobic plug. In: National Symposium on Biophysics and Golden Jubilee Meeting of Indian Biophysical Society, Center for Interdisciplinary Research in Basic Sciences, 14-17 February 2015, New Delhi, India.

Pradhan, Ranjan K. and Dash, Abhishek (2021) An Integrative Data Mining Approach to Identify Purinergic Signaling Genes and Associated Neurodegenerative Diseases. In: 12th International Conference on Computing Communication and Networking Technologies, ICCCNT 2021, 6 July 2021 through 8 July 2021, Kharagpur.

Raghavendra, N K (2014) HIV integrase - human LEDGF/p75 interface: a potential drug target. In: TRendys in Biochemistry, 17-18 October 2014, Guntur.

Rathinavelan, Thenmalarchelvi (2015) Revelation of osmoregulatory role of E. coli outer membrane lectin pinpoints potential antibacterial drug targets’. In: Current Trends in Computational Natural Sciences-2015, 5 April 2015, Hyderabad, India.

Rathinavelan, Thenmalarchelvi (2014) Structure and dynamics of bacterial outer membrane proteins to elucidate the mechanism of capsular polysaccharide surface expression. In: Interuniversity Accelerated System User Workshop, 5 May 2014, New Delhi.

Rathinavelan, Thenmalarchelvi (2015) Surface aromatic residues and hydrophobic plug aligned in the lumen of E. coli outer membrane lectin (Wzi) regulates bidirectional hydraulic conductivity. In: Scientific Applications on PARAM Yuva II, 8-9 January 2015, Pune.

Rathinavelan, Thenmalarchelvi (2015) Twisting Right to Left: A…A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation. In: International congress on DNA structure in Health and Disease, 12-13 April 2015, New Delhi, India.

Rathinavelan, Thenmalarchelvi and Imperatori, W (2012) Mechanism of Virulence Proteins Transport in Gram-negative Bbacteria: Computational and NMR investigations. In: Annual Meeting of the Indian Biophysical Society, 19-20 January 2012, Chennai, India.

Roy, Anindya (2015) Oxidative dealkylation by AlkB family of Enzymes. In: Metabolomics-2015, 12-13 January 2015, Bangalore. (Unpublished)

Book

Bhargava, Y and Bhargava, Anamika (2017) ZebraTrack: An Automated Method to Study Zebrafish Behaviour. LAMBERT Academic Publishing. ISBN 9783659900518

Thesis

Agarwal, S (2014) Colorimetric detection of UCHL1 using gold nanoparticles for rapid diagnosis of brain injury. Masters thesis, Indian Institute of Technology, Hyderabad.

Ahmed, Mohammed Tanveer (2016) Study on protein-protein interaction between scRad51 and Tpa1. Masters thesis, Indian Institute of Technology Hyderabad.

Arivarasan, S and Singh, Sandeep K (2018) Effects of Autism-associated mutations on structure and function of Epigenetic Regulator KMT5B. Masters thesis, Indian Institute of Technology Hyderabad.

B, Keerthana (2016) Mutational Analysis of residue V408 of LEDGE/p75. Masters thesis, Indian Institute of Technology Hyderabad.

B, Tirumaleshwar Reddy and Patel, Basant Kumar (2015) Finding Universal Inhibitor of Amyloid Aggregation. Masters thesis, Indian Institute of Technology Hyderabad.

Bisht, Vinod Singh and Raghavendra, N K (2018) Generation and purification of deletion constructs of UBC13 and their interaction with UEV1A. Masters thesis, Indian Institute of Technology Hyderabad.

Brahma, Musukha Mala and Misra, Ashish (2018) CONSTRUCTION OF LANDSCAPE OF DISEASE CAUSING MUTATION IN NEURODEGENERATIVE DISEASE AND DOCKING STUDIES TO IDENTIFY INHIBITORS TO PREVENT GTP BINDING AND INCREASE IN KINASE ACTIVITY. Masters thesis, Indian Institute of Technology Hyderabad.

Ch, Nimilitha (2014) Probing the role of RNA-DNA hybrids in instigating trinucleotide repeat instability and their interaction with RNase H1. Masters thesis, Indian Institute of Technology, Hyderabad.

Galli, S K (2015) Mutation of Trp131residue of Hiv-1 Integrase to T131f and Studying its Interactions with Ledgf/P75. Masters thesis, Indian Institute of Technology Hyderabad.

Gaur, Himanshu and Bhargava, Anamika (2019) Investigation of Toxicity Induced by Chemicals and Their Mechanisms using Zebrafish Vertebrate Animal Model. PhD thesis, Indian institute of technology Hyderabad.

Ghule, Komal Sanjeevan and Rathinavelan, Thenmalarchelvi (2018) Structural investigation of tetranucleotide repeats implicated in myotonic dystrophy 2 (DM2). Masters thesis, Indian Institute of Technology Hyderabad.

Girdhar, Amandeep and Patel, Basant Kumar (2020) Investigation of role of TDP-43 aggregation on heterologous aggregating proteins and modulation of TDP-43 aggregation by small molecules. PhD thesis, Indian Institute of Technology Hyderabad.

Goel, Isha and Roy, Anindya (2018) The Role Of Iron In The Catalytic Activity Of Non-heme Dioxygenase: A Study On Saccharomyces Cerevisiae 3-hydroxyanthranilic acid Dioxygenase Enzyme Bna1. Masters thesis, Indian Institute of Technology Hyderabad.

HARSHADA, S JADHAV and Bhargava, Anamika (2019) Investigating the effects of monosodium glutamate using zebrafish as an animal model. Masters thesis, Indian institute of technology Hyderabad.

Hossain, Mehedi (2016) Study on protein-protein interaction between hR ad51 and Alk B H 3. Masters thesis, Indian Institute of Technology Hyderabad.

Jain, Diksha (2017) Analysis of Ubc13 and Uev1A Interaction and Standardization of Expression and Purification protocols for Uba1, TRAF6, HLTF and Ubiquitin. Masters thesis, Indian Institute of Technology Hyderabad.

KRISHNA, M L N V SAI and Misra, Ashish (2019) Effect of mutations in SUMO protein on interaction with proteins involved in SUMOylation. Masters thesis, Indian institute of technology Hyderabad.

Kagoo, Andrea R and Bhargava, Anamika (2021) Analysis of genes modulated during induced toxicity in zebrafish and their mechanisms of toxicity. Masters thesis, Indian Institute of Technology Hyderabad.

Karpagam, Uma Sudhakar (2017) K-PAM: A Klebsiella Serotype Predictor and Capsular Antigen Modeler and Optimization of purification protocol of E. coli Wzi, an outer membrane protein. Masters thesis, Indian Insitute of Technology Hyderbad.

Kodipelli, Naveena (2016) Molecular Characterization of Saccharomyces cerevisiae TPA1, an Oxidative Demethylase Involved in Direct Repair of DNA Alkylation Damage. PhD thesis, Indian Institute of Technology Hyderabad.

Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2018) New structural insights into unusual nucleic acid conformations in relevance to mechanisms and pathogeneses of trinucleotide repeat expansion disorders. PhD thesis, Indian Institute of Technology Hyderabad.

Kunduru, Bharathi Reddy (2015) EK3D : An E. coli K antigen 3D Structural Database. Masters thesis, Indian Institute of Technology Hyderabad.

L, Ponoop Prasad Patro (2016) Computational tools to model and analyze biomolecular structures and interactions. Masters thesis, Indian Institute of Technology Hyderabad.

M J, Vidhya Bharathi (2016) Use of ade1 mutation for development of a versatile ed/white color assay of amyloid-induced oxidative stress in Saccharomyces cerevisiae. Masters thesis, Indian Institute of Technology Hyderabad.

Manglunia, Ruchi Rajkumar (2017) Modulation of Protein Amyloidogenicity by heterologous amyloid and post translational modification. Masters thesis, Indian Institute of Technology Hyderabad.

Maurya, S (2014) BSA and HSA protein amyloid aggregates: Comparison and design for potential applications. Masters thesis, Indian Institute of Technology, Hyderabad.

Mishra, P (2014) Role of Jab1 in regulating Ubiquitin carboxy-terminal hydrolase-1 (UCHL1) activity. Masters thesis, Indian Institute of Technology, Hyderabad.

Mohan, Monisha (2015) Structural analysis of Fe(II) and 2-oxoglutarate-dependent Dioxygenases: Escherichia coli AlkBand Saccharomyces cerevisiae Tpa1. Masters thesis, Indian Institute of Technology Hyderabad.

Mohandas, M L (2015) Mutant generation of Mms2 and structural analysis of modeled Uev1a N-terminus docked to Uev1a-Ubc13-CHIP heterotrimer. Masters thesis, Indian Institute of Technology Hyderabad.

Mutyala, Satish (2016) Computational characterization of Set domain group proteins (SDG) present in Arabidopsis thaliana, Zea mays and Oryza sativa japonica. Masters thesis, Indian Institute of Technology Hyderabad.

N, Aarthi (2016) Study on the effect of Stress conditions on Alzheimer’s disease using yeast Aβ42-MRF oligomerisation model. Masters thesis, Indian Institute of Technology Hyderabad.

Nalla, L P (2014) Generation and Characterization of Hen Egg White Lysozyme Amyloid Variants. Masters thesis, Indian Institute of Technology.

Narasimha, P. and Bhargava, Anamika (2021) Investigation of triclosan induced neurotoxicity and its mechanisms using zebrafish vertebrate animal model. PhD thesis, Indian Institute of Technology.

Nigam, Richa and Roy, Anindya (2019) Functional characterization of DNA dealkylation repair protein AlkB from Escherichia coli and use of indenone derivatives as inhibitors of AlkB and human AlkB homologue 3 (AlkBH3). PhD thesis, Indian institute of technology Hyderabad.

P, Srinithi and Bhargava, Anamika (2018) Effects of Sodium Benzoate Using Zebrafish Animal Model. Masters thesis, Indian Institute of Technology Hyderabad.

Palur, Venkata Raghuvamsi (2017) Validating the role of Gram-negative bacterial Wzi as a water conduction porin and development of a tool to estimate/characterize water conduction property. Masters thesis, Indian Insitute of Technology Hyderabad.

Parappuram, Irene Tomy and Patel, Basant Kumar (2019) The role of ER stress genes in modulating the toxicity of TDP43 in yeast ALS model. Masters thesis, Indian institute of technology Hyderabad.

Patil, Rajat and Raghavendra, N K (2019) A machine learning model to categorize proteins based on sequence - Use case for prediction of ubiquitination enzymes E2 and E3. Masters thesis, Indian institute of technology Hyderabad.

Poonam, P and Bhargava, A. (2020) Toxic effects of combined exposure of Triclosan and Glyphosate on the Zebrafish embryos. Masters thesis, Indian institute of technology Hyderabad.

Pranjal, K (2015) Modulation of Escherichia coli AlkB function by single-stranded DNA-binding protein. Masters thesis, Indian Institute of Technology Hyderabad.

Prasad, Archana and Patel, Basant Kumar (2017) Protein misfolding studies on TDP-43 protein involved in Amyotrophic Lateral Sclerosis (ALS) disease. PhD thesis, Indian institute of technology Hyderabad.

Rukmini, Sarma and Roy, Anindya (2019) The role of amino-terminal domain of RAD51C in promoting ALKBH3 DNA repair activity. Masters thesis, Indian institute of technology Hyderabad.

S, Jeevotham and Patel, Basant Kumar (2018) Average Distance Map Analysis of Amyloidogenic Protein Domains. Masters thesis, Indian Institute of Technology Hyderabad.

S, Kiruthika (2015) Studies on Yeast Model of Amyotrophic Lateral Sclerosis and Alzheimer’s Disease. Masters thesis, Indian Institute of Technology Hyderabad.

S, Preethi and Patel, Basant Kumar (2019) Effect of Zinc on the in vitro aggregation and phase separation of TDP-43 protein implicated in Amyotrophic Lateral Sclerosis. Masters thesis, Indian institute of technology Hyderabad.

Sachdeva, Shivangi (2016) Comparison of H2O diffusion mechanism of Klebsiella pneumonia outer membrane lectin with its E. coli counterpart. Masters thesis, Indian Institute of Technology Hyderabad.

Sahu, Chittaranjan and Bhargava, A. (2020) Understanding the role of T-type VGCC and ER-β in triple-negative breast cancer. Masters thesis, Indian institute of technology Hyderabad.

Sahu, Chittaranjan and Bhargava, Anamika (2020) Understanding the role of T-type VGCC and ER-β in Triple-Negative Breast Cancer. Masters thesis, Indian Institute of Technology Hyderabad.

Sharma, Mukul and Roy, Anindya (2020) Identification of new protein-coding open reading frames in Mycobacterium leprae and characterization of hypothetical protein ML0190. PhD thesis, Indian Institute of Technology Hyderabad.

Sharma, Neetu (2016) Protein Misfolding Studies on Human Semenogelin-1 and Serum Albumin Proteins. PhD thesis, Indian Institute of Technology Hyderabad.

Shazia, Siddiqui (2014) Mutation of Methionine 178 to Isoleucine of HIV-1 Integrase for analyzing its interaction with LEDGF/p75. Masters thesis, Indian Institute of Technology.

Shivange, Gururaj (2016) Studies On Escherichia Coli AlkB Mediated Direct DNA Repair: Molecular Characterization Of RecA And AlkB Interaction. PhD thesis, Indian Institute of Technology Hyderabad.

Sivalingam, Vishwanath and Patel, Basant Kumar (2017) Protein misfolding studies on human fibrinogen alpha chain and hen egg white lysozyme. PhD thesis, Indian institute of technology Hyderabad.

Sreeragh, Sivadas and Eerappa, Rajakumara (2018) Dynamic basis for Auranofin drug recognition by thiol-reductases of human pathogens, and intermediate coordinated adduct formation with catalytic cysteine residues. Masters thesis, Indian Institute of Technology Hyderabad.

Surekha, P and Eerappa, Rajakumara (2019) In silico structure based designing of covalent inhibitors against pathogenic kinases. Masters thesis, Indian institute of technology Hyderabad.

Tiwari, Vikas Ramyagya (2017) Search and validation of a versatile amyloid inhibitor. Masters thesis, Indian Institute of Technology Hyderabad.

Tomar, Kripi (2018) Development of Met-In -Prot server : Analysis and prediction of the metal binding pockets in Apoproteins & Exploring the influence of non-Watson and Crick base pairs on DNA Conformation via Molecular Dynamics techniques and Circular dichroism spectroscopy. Masters thesis, Indian Institute of Technology Hyderabad.

Umale, Ashwini Anil and Bhargava, Anamika (2021) Study of effects of triclosan and glyphosate on living organisms. Masters thesis, Indian Institute of Technology Hyderabad.

Vinothini, and Rathinavelan, Thenmalarchelvi (2019) Algorithms for (i) Prediction of Secondary Structure of Nucleic Acids from CD Spectra using Machine Learning and (ii) Determination of Dissociation Constant Associated with Biomolecular Interactions. Masters thesis, Indian institute of technology Hyderabad.

Patent

PCT/201741042270 (2017) method and kit for rapid risk stratification of traumatic brain injury. ..

Other

Anindya, Roy (2022) Cytoplasmic DNA in cancer cells: Several pathways that potentially limit DNase2 and TREX1 activities. Elsevier B.V..

Ashwaq, Omar and Manickavasagam, Pratibha and Haque, SK Manirul (2021) V483A: an emerging mutation hotspot of SARS-CoV-2. Future Medicine Ltd..

Avanthi, Althuri and Venkata Mohan, S. (2022) Emerging innovations for sustainable production of bioethanol and other mercantile products from circular economy perspective. Elsevier Ltd.

Bal, Elodie and Kumar, Rahul and Hadigol, Mohammad and et al, . (2022) Author Correction: Super-enhancer hypermutation alters oncogene expression in B cell lymphoma. Nature Research.

Das, Undurti N. (2022) Pro- and anti-inflammatory bioactive lipids imbalance contributes to the pathobiology of autoimmune diseases. Springer Nature.

Kumar, Rahul and Deng, Youping and Fan, Jian-Bing and et al, . (2022) Editorial: Early Detection and Diagnosis of Cancer. Frontiers Media S.A..

Mehta, G and Sanyal, Kaustuv and Abhishek, Suman and Rajakumara, Eerappa and Ghosh, Santanu K. (2022) Minichromosome maintenance proteins in eukaryotic chromosome segregation. John Wiley and Sons Inc.

Padmakumar, Ananya and Koyande, Navami Prabhakar and Rengan, Aravind Kumar (2022) The Role of Hitchhiking in Cancer Therapeutics—A Review. John Wiley and Sons Inc.

Patel, Basant Kumar and Singh, Sandeep K and Eerappa, Rajakumara and et al, . (2020) IIT Hyderabad finds better solution to treat 'Lou Gehrig's disease. India Today, Hyderabad.

Podh, Nitesh Kumar and Paliwal, Sheetal and Dey, Partha and Das, Ayan and Morjaria, Shruti and Mehta, Gunjan (2021) In-vivo Single-Molecule Imaging in Yeast: Applications and Challenges. Academic Press.

Pullaguri, Narasimha and Umale, Ashwini and Bhargava, Anamika (2022) Neurotoxic mechanisms of triclosan: The antimicrobial agent emerging as a toxicant. Wiley.

Rando, Halie M. and MacLean, Adam L. and Ray, Sandipan and et al, . (2022) Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”. American Society for Microbiology.

Roy, Anindya (2019) IIT Hyderabad researchers unravel working of protein that repairs damaged DNA. India Today, Hyderabad.

Sah, Mahesh Kumar and Mukherjee, Sunny and Flora, Bableen and Malek, Naved and Rath, Subha Narayan (2022) Advancement in “Garbage In Biomaterials Out (GIBO)” concept to develop biomaterials from agricultural waste for tissue engineering and biomedical applications. Springer Science and Business Media Deutschland GmbH.