Browse by IITH Authors

Article

Rathinavelan, Thenmalarchelvi (2023) Sequence patterns and HMM profiles to predict proteome wide zinc finger motifs. Pattern Recognition, 135. p. 109134. ISSN 0031-3203

Rathinavelan, Thenmalarchelvi (2023) CoVe-Tracker: An Interactive SARS-CoV-2 Pan Proteome Evolution Tracker. Journal of Proteome Research, 22 (6). pp. 1984-1996. ISSN 1535-3893

Patro, L.P.P. and Rathinavelan, Thenmalarchelvi (2022) STRIDER: Steric hindrance and metal coordination identifier. Computational Biology and Chemistry, 98. pp. 1-7. ISSN 1476-9271

Bhanjadeo, Madhabi M. and Nial, Partha S. and Sathyaseelan, Chakkarai and Singh, Ajit K. and Dutta, Juhi and Rathinavelan, Thenmalarchelvi and et al, . (2022) Biophysical interaction between lanthanum chloride and (CG)n or (GC)n repeats: A reversible B-to-Z DNA transition. International Journal of Biological Macromolecules, 216. pp. 698-709. ISSN 0141-8130

Magateshvaren Saras, Murali Aadhitya and Patro, L. Ponoop Prasad and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2022) Geographical distribution of SARS‐CoV ‐2 amino acids mutations and the concomitant evolution of seven distinct clades in non‐human hosts. Zoonoses and Public Health. pp. 1-10. ISSN 1863-1959

Magateshvaren Saras, Murali Aadhitya and Patro, L. Ponoop Prasad and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2022) SARS‐CoV ‐2 whole‐proteome sequences from environment as an indicator of community viral distribution, evolution and epidemiological dynamics: A cohort analysis of Austria. Environmental Microbiology Reports. pp. 1-6. ISSN 1758-2229

Ajjugal, Yogeeshwar and Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2021) Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS. Scientific Reports, 11 (1). ISSN 2045-2322

Patro, L Ponoop Prasad and Sathyaseelan, Chakkarai and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2021) Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades. Infection, Genetics and Evolution, 93 (104973). ISSN 15671348

Uttamrao, P.P. and Sathyaseelan, C. and Patro, L.P.P. and Rathinavelan, T. (2021) Revelation of Potent Epitopes Present in Unannotated ORF Antigens of SARS-CoV-2 for Epitope-Based Polyvalent Vaccine Design Using Immunoinformatics Approach. Frontiers in Immunology, 12. ISSN 16643224

Uttamrao, P.P. and Sathyaseelan, C. and Patro, L.P.P. and Rathinavelan, T. (2021) Revelation of Potent Epitopes Present in Unannotated ORF Antigens of SARS-CoV-2 for Epitope-Based Polyvalent Vaccine Design Using Immunoinformatics Approach. Frontiers in Immunology, 12. ISSN 25740962

Patro, L. Ponoop Prasad and Sathyaseelan, Chakkarai and Uttamrao, Patil Pranita and Rathinavelan, Thenmalarchelvi (2021) The evolving proteome of SARS-CoV-2 predominantly uses mutation combination strategy for survival. Computational and Structural Biotechnology Journal, 19. pp. 3864-3875. ISSN 20010370

Sathyaseelan, Chakkarai and Vijayakumar, Vinothini and Rathinavelan, Thenmalarchelvi (2021) CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms. Journal of Molecular Biology, 433 (11). p. 166629. ISSN 00222836

Ajjugal, Y. and Rathinavelan, T. (2021) Conformational distortions induced by periodically recurring A…A in d(CAG).d(CAG) provide stereochemical rationale for the trapping of MSH2.MSH3 in polyQ disorders. Computational and Structural Biotechnology Journal, 19. pp. 4447-4455. ISSN 20010370

Ajjugal, Yogeeshwar and Rathinavelan, Thenmalarchelvi (2021) Sequence dependent influence of an A…A mismatch in a DNA duplex: An insight into the recognition by hZαADAR1 protein. Journal of Structural Biology, 213 (1). p. 107678. ISSN 10478477

Ajjugal, Yogeeshwar and Tomar, Kripi and Rao, D Krishna and Rathinavelan, Thenmalarchelvi (2021) Spontaneous and frequent conformational dynamics induced by A…A mismatch in d(CAA)·d(TAG) duplex. Scientific Reports, 11 (1). ISSN 2045-2322

Patro, L Ponoop Prasad and Sudhakar, Karpagam Uma and Rathinavelan, Thenmalarchelvi (2020) K-PAM: a unified platform to distinguish Klebsiella species K- and O-antigen types, model antigen structures and identify hypervirulent strains. Scientific Reports, 10 (1). ISSN 2045-2322

Patro, L Ponoop Prasad and Rathinavelan, Thenmalarchelvi (2019) Targeting the Sugary Armor of Klebsiella Species. Frontiers in Cellular and Infection Microbiology, 9. ISSN 2235-2988

Ponoop Prasad Patro, L and Kumar, A and Kolimi, N and Rathinavelan, Thenmalarchelvi (2017) 3D-NuS: A Web Server for Automated Modeling and Visualization of non-canonical 3-D imensional Nu cleic Acid S tructures. Journal of Molecular Biology, 429 (16). pp. 2438-2448. ISSN 0022-2836

Kolimi, Narendar and Ajjugal, Yogeeshwar and Rathinavelan, Thenmalarchelvi (2017) A B−−Z junction induced by an A...A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZαADAR1 protein. Journal of Biological Chemistry. pp. 1-22. ISSN 0021-9258 (In Press)

Sachdeva, S and Palur, R V and Sudhakar, K U and Rathinavelan, Thenmalarchelvi (2017) E. coli Group 1 Capsular Polysaccharide Exportation Nanomachinary as a Plausible Antivirulence Targetin the Perspective of Emerging Antimicrobial Resistance. Frontiers in Microbiology, 8 (70). pp. 1-19. ISSN 1664-302X

Sachdeva, S and Kolimi, Narendar and Nair, S A and Rathinavelan, Thenmalarchelvi (2016) Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin. Scientific Reports. pp. 1-14. ISSN 2045-2322

Goldsmith, G and Rathinavelan, Thenmalarchelvi and Yathindra, N (2016) Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets. PLoS ONE, 11 (3). e0152102_1-29. ISSN 1932-6203

Kunduru, B R and Nair, S A and Rathinavelan, Thenmalarchelvi (2015) EK3D: an E. coli K antigen 3-dimensional structure database. Nucleic Acids Research. pp. 1-7. ISSN 0305-1048

Khan, N and Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2015) Twisting Right to Left: A...A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation. PLoS Computational Biology, 11 (1). pp. 1-21. ISSN 1553-734X

Rathinavelan, Thenmalarchelvi and Lara-Tejero, Maria and Lefebre, Matthew and et al, . (2014) NMR Model of PrgI–SipD Interaction and Its Implications in the Needle-Tip Assembly of the Salmonella Type III Secretion System. Journal of Molecular Biology, 426 (16). pp. 2958-2969. ISSN 00222836

Book Section

Patro, L Poonop Prasad and Kumar, Abhishek and Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2018) 3D-NuS: A Web Server for Automated Modeling and Visualization of Non-Canonical 3-Dimensional Nucleic Acid Structures. In: Gandhian Young Technological Innovation. Honey Bee Network, New Delhi, pp. 53-54. ISBN 81871602046

Conference or Workshop Item

Kolimi, N and Khan, N and Rathinavelan, Thenmalarchelvi (2015) A…A mismatch instigates B- to Z-DNA transition in a DNA duplex comprising of CAG & GAC trinucleotide repeat expansions. In: National Symposium on Biophysics and Golden Jubilee Meeting of Indian Biophysical Society, Center for Interdisciplinary Research in Basic Sciences, 14-17 February 2015, New Delhi, Delhi.

Nair, S A and Rathinavelan, Thenmalarchelvi (2015) Bidirectional water conductivity of E.coli outer membrane lectin(Wzi) is regulated by surface aromatic residues and luminal hydrophobic plug. In: National Symposium on Biophysics and Golden Jubilee Meeting of Indian Biophysical Society, Center for Interdisciplinary Research in Basic Sciences, 14-17 February 2015, New Delhi, India.

Rathinavelan, Thenmalarchelvi (2015) Revelation of osmoregulatory role of E. coli outer membrane lectin pinpoints potential antibacterial drug targets’. In: Current Trends in Computational Natural Sciences-2015, 5 April 2015, Hyderabad, India.

Rathinavelan, Thenmalarchelvi (2015) Surface aromatic residues and hydrophobic plug aligned in the lumen of E. coli outer membrane lectin (Wzi) regulates bidirectional hydraulic conductivity. In: Scientific Applications on PARAM Yuva II, 8-9 January 2015, Pune.

Rathinavelan, Thenmalarchelvi (2015) Twisting Right to Left: A…A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation. In: International congress on DNA structure in Health and Disease, 12-13 April 2015, New Delhi, India.

Rathinavelan, Thenmalarchelvi (2014) Structure and dynamics of bacterial outer membrane proteins to elucidate the mechanism of capsular polysaccharide surface expression. In: Interuniversity Accelerated System User Workshop, 5 May 2014, New Delhi.

Rathinavelan, Thenmalarchelvi and Imperatori, W (2012) Mechanism of Virulence Proteins Transport in Gram-negative Bbacteria: Computational and NMR investigations. In: Annual Meeting of the Indian Biophysical Society, 19-20 January 2012, Chennai, India.

Thesis

Vinothini, and Rathinavelan, Thenmalarchelvi (2019) Algorithms for (i) Prediction of Secondary Structure of Nucleic Acids from CD Spectra using Machine Learning and (ii) Determination of Dissociation Constant Associated with Biomolecular Interactions. Masters thesis, Indian institute of technology Hyderabad.

Tomar, Kripi (2018) Development of Met-In -Prot server : Analysis and prediction of the metal binding pockets in Apoproteins & Exploring the influence of non-Watson and Crick base pairs on DNA Conformation via Molecular Dynamics techniques and Circular dichroism spectroscopy. Masters thesis, Indian Institute of Technology Hyderabad.

Kolimi, Narendar and Rathinavelan, Thenmalarchelvi (2018) New structural insights into unusual nucleic acid conformations in relevance to mechanisms and pathogeneses of trinucleotide repeat expansion disorders. PhD thesis, Indian Institute of Technology Hyderabad.

Ghule, Komal Sanjeevan and Rathinavelan, Thenmalarchelvi (2018) Structural investigation of tetranucleotide repeats implicated in myotonic dystrophy 2 (DM2). Masters thesis, Indian Institute of Technology Hyderabad.