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Article

Majumdar, Saptarshi and Giri, Lopamudra (2023) Non-prophylactic resveratrol-mediated protection of neurite integrity under chronic hypoxia is associated with reduction of Cav1.2 channel expression and calcium overloading. Neurochemistry International, 164. p. 105466. ISSN 0197-0186

Sharma, Surbhi and Keerthi, Pujari Nagasree and Giri, Lopamudra and Mitra, Kishalay (2023) Toward Performance Improvement of a Baculovirus–Insect Cell System under Uncertain Environment: A Robust Multiobjective Dynamic Optimization Approach for Semibatch Suspension Culture. Industrial & Engineering Chemistry Research, 62 (1). pp. 111-125. ISSN 0888-5885

Mitra, Kishalay and Giri, Lopamudra (2023) Computational framework to understand the clinical stages of COVID-19 and visualization of time course for various treatment strategies. Biotechnology and Bioengineering, 120 (6). pp. 1640-1656. ISSN 0006-3592

Giri, Lopamudra and Majumdar, Saptarshi (2023) Hofmeister series: An insight into its application on gelatin and alginate-based dual-drug biomaterial design. European Polymer Journal, 189. p. 111961. ISSN 0014-3057

Jana, Soumya and Giri, Lopamudra (2023) Three-Dimensional Tracking of Intracellular Calcium and Redox State during Real-Time Control in a Hypoxic Gradient in Microglia Culture: Comparison of the Channel Blocker and Reoxygenation under Ischemic Shock. ACS Chemical Neuroscience, 14 (10). pp. 1810-1825. ISSN 1948-7193

Dey, Aishee and Gare, Suman and Swain, Sarpras and Bhattacharya, Proma and Dhyani, Vaibhav and Giri, Lopamudra and et al, . (2022) 3D imaging and quantification of PLL coated fluorescent ZnO NP distribution and ROS accumulation using laser scanning confocal microscopy. AIChE Journal, 68 (9). ISSN 0001-1541

Kankanamge, Dinesh and Ubeysinghe, Sithurandi and Tennakoon, Mithila and Pantula, Priyanka Devi and Mitra, Kishalay and Giri, Lopamudra and Karunarathne, Ajith (2021) Dissociation of the G protein βγ from the Gq–PLCβ complex partially attenuates PIP2 hydrolysis. Journal of Biological Chemistry, 296. p. 100702. ISSN 00219258

Manohar, Kuruba and Gupta, Rishikesh Kumar and Gupta, Parth and Saha, Debasmita and Gare, Suman and Sarkar, Rahuldeb and Misra, Ashish and Giri, Lopamudra (2021) FDA approved L-type channel blocker Nifedipine reduces cell death in hypoxic A549 cells through modulation of mitochondrial calcium and superoxide generation. Free Radical Biology and Medicine, 177. pp. 189-200. ISSN 0891-5849

Manohar, Kuruba and Gare, Suman and Chel, Soumita and Dhyani, Vaibhav and Giri, Lopamudra (2021) Quantitative Confocal Microscopy for Grouping of Dose–Response Data: Deciphering Calcium Sequestration and Subsequent Cell Death in the Presence of Excess Norepinephrine. SLAS Technology, 26 (5). pp. 454-467. ISSN 2472-6303

Dhyani, Vaibhav and Swain, Sarpras and Gupta, Rishikesh Kumar and Saxena, Abha and Singh, Ranjana and Giri, Lopamudra (2021) Role of Metabotropic Glutamate Receptors (mGluRs) in the Regulation of Cellular Calcium Signaling: Theory, Protocols, and Data Analysis. Neuromethods, 164. pp. 81-115. ISSN 0893-2336

Das, Ashok and Dutta, Soumajit and Sen, Moumita and Saxena, Abha and Kumar, Jitendra and Giri, Lopamudra and Murhammer, David W. and Chakraborty, Jayanta (2021) A detailed model and Monte Carlo simulation for predicting DIP genome length distribution in baculovirus infection of insect cells. Biotechnology and Bioengineering, 118 (1). pp. 238-252. ISSN 0006-3592

Singh, Ranjana and Sharma, Surbhi and Kareenhalli, Venkatesh V. and Giri, Lopamudra and Mitra, Kishalay (2020) Experimental investigation into indole production using passaging of E. coli and B. subtilis along with unstructured modeling and parameter estimation using dynamic optimization: An integrated framework. Biochemical Engineering Journal, 163. p. 107743. ISSN 1369703X

Dhyani, Dhyani and Gare, Suman and Gupta, Rishikesh Kumar and Swain, Sarpras and Venkatesh, K.V. and Giri, Lopamudra (2020) GPCR mediated control of calcium dynamics: A systems perspective. Cellular Signalling, 74. p. 109717. ISSN 08986568

Shahulhameed, Shahna and Swain, Sarpras and Jana, Soumya and et al, . (2020) A Robust Model System for Retinal Hypoxia: Live Imaging of Calcium Dynamics and Gene Expression Studies in Primary Human Mixed Retinal Culture. Frontiers in Neuroscience, 13 (7). ISSN 1662-4548

Saxena, Abha and Ravutla, Suryateja and Jana, Soumya and et al, . (2020) Statistical modeling of cell‐to‐cell variability in viral infection during passaging in suspension cell culture: Application in Monte‐Carlo simulation. Biotechnology & Bioengineering. ISSN 1097-0290

Venkateswarlu, Kojja and Suman, Gare and Dhyani, Vaibhav and Swain, Sarpras and Giri, Lopamudra and Samavedi, Satyavrata (2020) Three‐dimensional imaging and quantification of real‐time cytosolic calcium oscillations in microglial cells cultured on electrospun matrices using laser scanning confocal microscopy. Biotechnology and Bioengineering, 117 (10). pp. 3108-3123. ISSN 0006-3592

Bhattacharya, Proma and Swain, Sarpras and Giri, Lopamudra and Neogi, Sudarsan (2019) Fabrication of Magnesium Oxide Nanoparticles by Solvent Alteration and Its Bactericidal Applications. Journal of Materials Chemistry B. ISSN 2050-750X

Bhattacharya, Proma and Swain, Sarpras and Giri, Lopamudra and Neogi, Sudarsan (2019) Fabrication of magnesium oxide nanoparticles by solvent alteration and their bactericidal applications. Journal of Materials Chemistry B, 7 (26). pp. 4141-4152. ISSN 2050-750X

Varanasi, Santhosh Kumar and Swain, Sarpras and Giri, Lopamudra and Jampana, Phanindra Varma (2019) Identification of Neuronal Networks from Calcium Oscillation Data. IFAC-PapersOnLine, 52 (1). pp. 544-549. ISSN 24058963

Giri, Lopamudra and Pedireddi, V R (2018) Synthesis and structure analysis of three new lanthanide complexes, [Ce(NO 3 ) 6 ].[(H- phen ) 6 .(NO 3 ) 3 ], [Pr(NO 3 ) 6 ].[(H- phen ) 6 .(NO 3 ) 3 ] and [Sm(NO 3 ) 3 ].( phen ).(H 2 O) 2 ].[(H- phen ).(NO 3 ).H 2 O]. Inorganica Chimica Acta. ISSN 0020-1693

Saxena, Abha and Byram, Prasanna Kumar and Singh, Suraj Kumar and Chakraborty, Jayanta and Murhammr, David and Giri, Lopamudra (2018) A structured review of baculovirus infection process: integration of mathematical models and biomolecular information on cell–virus interaction. Journal of General Virology. ISSN 0022-1317 (In Press)

Rathi, Sonika and Jalali, Subhadra and Patnaik, Satish and Shahulhameed, Shahna and Musada, Ganeswara R and Balakrishnan, Divya and Rani, Padmaja K and Kekunnaya, Ramesh and Chhablani, Preeti Patil and Swain, Sarpras and Giri, Lopamudra and Chakrabarti, Subhabrata and Kaur, Inderjeet (2017) Abnormal Complement Activation and Inflammation in the Pathogenesis of Retinopathy of Prematurity. Frontiers in Immunology, 8. pp. 1-13. ISSN 1664-3224

Gupta, R K and Swain, S and Kankanamge, D and Priyanka, P D and Singh, R and Mitra, Kishalay and Karunarathne, A and Giri, Lopamudra (2017) Comparison of Calcium Dynamics and Specific Features for G Protein-Coupled Receptor-Targeting Drugs Using Live Cell Imaging and Automated Analysis. SLAS Discovery, 22 (7). pp. 848-858. ISSN 2472-5552

Singh, R and Miriyala, S S and Giri, Lopamudra and Mitra, Kishalay and Kareenhalli, V V (2017) Identification of Unstructured model for Subtilin production through Bacillus subtilis using Hybrid Genetic Algorithm. Process Biochemistry, 60. pp. 1-12. ISSN 1359-5113

Giri, Lopamudra and Patel, Anilkumar K. and Karunarathne, W.K. Ajith and et al, . (2014) A G-Protein Subunit Translocation Embedded Network Motif Underlies GPCR Regulation of Calcium Oscillations. Biophysical Journal, 107 (1). pp. 242-254. ISSN 00063495

Conference or Workshop Item

Gare, S and Jana, S. and Giri, L (2021) Dimension reduction and clustering of single cell calcium spiking: Comparison of t-SNE and UMAP. In: 27th National Conference on Communications, NCC 2021, 27 July 2021 through 30 July 2021, Virtual, Kanpur.

Ande, Sathish and Regatti, Jayanth R and Pandey, Neha and Karunarathne, Ajith and Giri, Lopamudra and Jana, Soumya (2021) Heterogeneity in Neuronal Calcium Spike Trains based on Empirical Distance. In: International IEEE/EMBS Conference on Neural Engineering, NER, 4 May 2021 - 6 May 2021.

Dhyani, Vaibhav and Jana, Soumya and Giri, Lopamudra (2021) Gaussian Mixture Modeling of Single-Neuron Responses Obtained from Confocal-Calcium-Imaging of Dissociated Rat Hippocampal Neurons. In: International IEEE/EMBS Conference on Neural Engineering, NER, 25-28 May, 2017, Regal International East Asia HotelShanghai; China.

Ande, Sathish and Avasarala, Srinivas and Regatti, Jayanth R and Pandey, Neha and Swain, Sarpras and Karunarathne, Ajith and Giri, Lopamudra and Jana, Soumya (2021) Information Content in Neuronal Calcium Spike Trains: Entropy Rate Estimation based on Empirical Probabilities. In: Proceedings - 2020 IEEE EMBS Conference on Biomedical Engineering and Sciences, IECBES 2020, 1 March 2021 - 3 March 2021.

Sharma, Surbhi and Saxena, Abha and Chel, Soumita and Mitra, Kishalay and Giri, Lopamudra (2021) Mathematical modeling of viral infection dynamics and immune response in SARS-CoV-2: A computational framework for testing drug efficacy. In: 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2021, 1 November 2021 through 5 November 2021, Virtual, Online.

Ande, Sathish and Avasarala, Srinivas and Karunarathne, Ajith and Giri, Lopamudra and Jana, Soumya (2021) Statistical Dependence between Neuronal Spike Train Pairs: Quantification based on Empirical Mutual Information Rate. In: 2021 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2021, 27 July 2021 through 30 July 2021, Virtual, Online.

Sharma, Surbhi and Pujari, Keerthi Nagasree and Miriyala, Srinivas Soumitri and Giri, Lopamudra and Mitra, Kishalay (2021) Unstructured modeling and RNN Surrogate development for optimizing vaccine production in Baculovirus Expression Vector System. In: 7th Indian Control Conference, ICC 2021, 20 December 2021 through 22 December 2021, Virtual, Online.

Pantula, Priyanka D and Miriyala, Srinivas S and Giri, Lopamudra and Mitra, Kishalay (2020) Synchronicity Identification in Hippocampal Neurons using Artificial Neural Network assisted Fuzzy C-means Clustering. In: 2020 IEEE Symposium Series on Computational Intelligence, SSCI 2020,, 1 December 2020 - 4 December 2020.

Chel, Soumita and Gare, Suman and Giri, Lopamudra (2020) Detection of Specific Templates in Calcium Spiking in HeLa Cells Using Hierarchical DBSCAN: Clustering and Visualization of CellDrug Interaction at Multiple Doses*. In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, 20 July 2020 - 24 July 2020.

Saxena, Abha and Dhyani, Vaibhav and Jana, Soumya and Giri, Lopamudra (2020) Application of kohonen-self organizing map to cluster drug induced Ca2+ response in hippocampal neurons at different drug dose. In: Indian Institute of Technology Hyderabad, 21 February 2020 - 23 February 2020.

Saxena, Abha and Dhyani, Vaibhav and Jana, Soumya and et al, . (2020) Application of kohonen-self organizing map to cluster drug induced Ca2+ response in hippocampal neurons at different drug dose. In: National Conference on Communications (NCC), 21-23 February 2020, Kharagpur, India.

Suman, Gare and Saxena, Abha and Giri, Lopamudra (2020) Confocal Imaging of Intercellular Calcium in HeLa Cells for Monitoring Drug-Response: Biophysical Framework for Visualization of the Time-Lapse Images. In: Proceedings - International Symposium on Biomedical Imaging, 3 April 2020 - 7 April 2020.

Spoorthy, Divya and Manne, Shanmukh Reddy and Giri, Lopamudra and et al, . (2019) Automatic Identification of Mixed Retinal Cells in Time-Lapse Fluorescent Microscopy Images using High-Dimensional DBSCAN. In: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 23-27 July 2019, Berlin, Germany.

Pantula, Devi Priyanka and Miriyala, S S and Swain, Sarpras and et al, . (2019) Automation of Synchronicity Identification in Hippocampal Neurons through Intelligent Data Clustering Approach. In: Sixth Indian Control Conference (ICC), 18-20 December 2019, Hyderabad, India.

Saxena, Abha and Upadhyay, Vikas and Jana, Soumya and et al, . (2019) Cell-to-Cell Variability in Protein Expression during Viral Infection: Monte-Carlo Simulation and Validation based on Confocal Imaging*. In: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 23-27 July 2019, Berlin, Germany.

Singh, Ranjana and Sharma, Surbhi and Giri, Lopamudra and et al, . (2019) Dynamic Optimization for Optimal Production of Indole in a Mixed Culture. In: Sixth Indian Control Conference (ICC), 18-20 December 2019, Hyderabad, India.

Saxena, Abha and Dhyani, Vaibhav and Gare, S and Giri, Lopamudra (2019) Effect of topology and time window on probability distribution underlying baclofen induced Ca2+ response in hippocampal neurons. In: Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 23-27 July 2019., Berlin, Germany.

Singh, Ranjana and Saxena, Abha and Giri, Lopamudra (2019) Single Neuron Imaging Reveals Metabotropic Glutamate Receptor-Mediated Bursting and Delay in Calcium Oscillation in Hippocampal Neurons. In: 41 st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBS), 23-27 July 2019, Berlin, Germany.

Upadhyay, Vikas and Teja, Ravutla Surya and Giri, Lopamudra and George, Kevin and Dhyani, Vaibhav and George, Kevin and Swain, Sarpras and Mitra, Kishalay (2019) A model screening framework for the generation of Ca2+ oscillations in hippocampal neurons using differential evolution. In: 9th International IEEE/EMBS Conference on Neural Engineering (NER), 20-23 March 2019, San Francisco, CA, USA, USA.

Swain, Sarpras and Pantula, Priyanka Devi and Mitra, Kishalay and Giri, Lopamudra (2018) Confocal imaging of cytosolic Ca2+ and fuzzy clustering reveal the circuit topology details underlying synchronization in hippocampal neurons. In: IEEE Engineering in Medicine and Biology Society, July 2018, Japan.

Swain, Sarpras and Pantula, Priyanka Devi and Mitra, Kishalay and Giri, Lopamudra (2018) Confocal imaging of cytosolic Ca2+ and fuzzy clustering reveal the circuit topology details underlying synchronization in hippocampal neurons. In: Engineering in Medicine and Biology Society (EMBC), 17-21 July 2018, Hawaii, USA.

Dey, A and Giri, Lopamudra and Neogi, S (2018) Novel fluorescent nano structures for bio-imaging of MCF-7 cells. In: Nanoscale Science and Engineering Forum 2018 - Core Programming Area at the 2018 AIChE Annual Meeting, 28 October 2018-2 November 2019, Pittsburgh; United States.

Miriyala, Srinivas Soumitri and Pantula, Priyanka D and Giri, Lopamudra and Mitra, Kishalay (2018) Smart Data Analytics approach to model Complex Biochemical Oscillations in Hippocampal Neurons. In: IEEE Engineering in Medicine and Biology Society, July 2018, Hawaii , USA.

Sahu, S and Kumar, G V P and Paul, B and Singh, Riddhi and et al, . (2018) Towards Early Detection Of Hypoxia: Fabrication Of Facile, Robust, Cobalt Doped Zno Nano Fiber For In Situ Sensing Of Dissolved Oxygen. In: EMBS Micro and nanotechnology in medicine conference, 10-14 December 2018, Kauai, Hawaii.

Swain, Sarpras and Ande, Sathish and Suryateja, Ravutla and Jana, Soumya and Giri, Lopamudra (2017) Spatially resolved calcium spiking in hippocampal neurons: Estimation via confocal imaging and model-based simulation. In: International IEEE/EMBS Conference on Neural Engineering, NER, 25-28 May, 2017, Regal International East Asia HotelShanghai; China.

Joseph, Jophin G. and Nanda, S. and Jana, Soumya and Giri, Lopamudra and et al, . (2016) Integrated quantification based on confocal imaging: Cell crowding modulates heterogeneity in GPCR-mediated calcium oscillation. In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 16-20 August 2016, Orlando, FL, USA.

Reddy, P and Shukla, S and Karunarathne, A and Jana, Soumya and Giri, Lopamudra (2015) Segmentation of Neuron and Measurement of Optically Programed Neurite Growth: Fast Automation via Bayesian Thresholding. In: 7th Annual International IEEE EMBS Conference on Neural Engineering, 22 - 24 April, 2015, Montpellier, France,.

Thesis

Harsha, Kurre Sri and Giri, Lopamudra (2019) Fabrication of co-culture device for biological applications using 3D printing: Comparison of Fused Deposition Modeling (FDM) and Stereolithography (SLA). Masters thesis, Indian institute of technology Hyderabad.

Swain, Sarpras and Giri, Lopamudra (2019) A Novel Framework for Biomedical Imaging Integrating 3D Printed Device, Confocal Microscopy and Large Scale Data Analytics. PhD thesis, Indian institute of technology Hyderabad.

Singh, Suraj Kumar and Giri, Lopamudra (2018) Mathematical modelling of baculovirus infection process: Kinetic parameter estimation. Masters thesis, Indian Institute of Technology Hyderabad.

Other

Das, Sougat and Majumdar, Saptarshi and Giri, Lopamudra and et al, . (2022) Imaging Methods for the Assessment of a Complex Hydrogel as an Ocular Drug Delivery System for Glaucoma Treatment: Opportunities and Challenges in Preclinical Evaluation. American Chemical Society.

Giri, Jyotsnendu and Murty, B S (2020) IIT-H provides sanitisers for the masses. The Hindu, Hyderabad.