Accelerated reconfigurable string matching using hardware-software codesign for computational bioinformatics applications

Gudur, Venkateshwarlu Yellaswamy and Acharyya, Amit (2017) Accelerated reconfigurable string matching using hardware-software codesign for computational bioinformatics applications. In: European Conference on Circuit Theory and Design (ECCTD), 4-6 September 2017, Catania, Italy.

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Abstract

Development of technologies in bioinformatics resulted into many folds growth of biological data that led to the research for accelerated solutions in various domains of computational bioinformatics. String matching is one of the most widely performed tasks at various stages of computational pipeline and it needs an accelerated and reconfigurable methodology for implementation. In this paper we present hardware-software codesign based accelerated and reconfigurable methodology for string matching and verify it using protein identification as a case study. In addition to real-time reconfigurability, our proposed methodology for string matching is 4 and 1.5 times faster than state of the art software and hardware methods respectively.

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IITH Creators:	IITH Creators ORCiD Acharyya, Amit http://orcid.org/0000-0002-5636-0676
Item Type:	Conference or Workshop Item (Paper)
Uncontrolled Keywords:	reconfigurable systems, string matching, hardware-software codesign, real-time reconfiguration, hardware acceleration
Subjects:	Electrical Engineering
Divisions:	Department of Electrical Engineering
Depositing User:	Team Library
Date Deposited:	14 May 2019 04:02
Last Modified:	14 May 2019 04:02
URI:	http://raiithold.iith.ac.in/id/eprint/5141
Publisher URL:	http://doi.org/10.1109/ECCTD.2017.8093346
Related URLs:	Google Scholar

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